So, replacing the plugs that capped off the emissions control system solved pretty much any problem related to deceleration and (possibly) low-throttle nastiness. But, knowing me, I can't leave well enough alone, and this also gave me the chance to focus on what's still acting up, namely:
- Popping out the left side exhaust while at idle, which changes to a consistent snapping at throttle.
- Runs nice and smooth while cold, vibrates like crazy when warm.
I can chock the second bit up to poor tuning (either float levels or mixture settings). Way I figure, I've got one cylinder set too rich, so she runs fine when cold, but when it heats up it starts to run ragged. Not enough to drop that cylinder entirely, but enough to make it run like garbage, and a 5-cylinder bike inevitably runs like crap. In fact, stock settings for the ilde mix are 1.5 turns out, but everyone who owns a 1300 runs them in the 3-3.5 range. I'm setting mine via colortune, so who knows. Guess I'll try to get mine to the leaner end of things, regardless.
The first is the biggest one- a miss or pop out the left side is something that has NEVER completely gone away. Best I got at this point is a vacuum leak- Thing is, these are THE stoutest intake boots I've ever seen- A metal plate mounts to the double intake on the engine block, and the whole thing is coated in rubber to make it seal, including the meaty oblong bit that clamps to the carburetors. Still, I pulled the center intake boot, and while the backside looked pretty good, it's also not perfect. I've got a set of replacements, so I'm hoping those work. If not- I'm out of ideas. Heck, I pulled the valve cover just to make sure the camshaft lobes weren't messed up (they weren't).
The only other big change is that I decided to put the original center carb back in- the replacement made no difference to the above problems, and it's in MUCH better shape than the one I temporarily replaced it with. Hopefully we'll get it all back together this weekend and get some results.
(Look, I'm not great at motorcycle repair. I'm blindly wandering my way through this the best I can, and learning more about engine maintenance than I knew before, which was "nothing". So I'm doing my best.

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Oh yeah, and I need a new front tire. Mine no longer holds air (and is probably overdue for a change).
